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Sourdough Discard

Sourdough Lemon Blueberry Cookies (Blueberry Muffin Cookies)

These lemon blueberry cookies (aka blueberry muffin cookies) are made with fresh blueberries, fermented lemon, and sourdough starter for the best flavor.

Prep: 15 minutes
Cook: 20 minutes
Total: 35 minutes
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Recipe Index | Ferment | Sourdough Discard

Sourdough Lemon Blueberry Cookies (Blueberry Muffin Cookies)

These lemon blueberry cookies (aka blueberry muffin cookies) are made with fresh blueberries, fermented lemon, and sourdough starter for the best flavor.

Lemon Blueberry Cookies

When I decided to develop a recipe for sourdough lemon blueberry cookies, I wanted to make sure the lemon flavor was prominent. So, I used fermented lemon rind in my cookies instead of lemon zest. If you’ve never baked with fermented lemon and have some in your fridge, you have to try it! It’s so darn good.

I think I’ll use fermented lemon rind instead of zest in baking recipes more often. I find the fermented lemon rind more floral and fragrant than lemon zest.

lemon blueberry cookies on a piece of crinkly white parchment paper. one cookie has a bite taken out of it.

Now, you can use regular lemon zest in these cookies if you don’t have any salt-cured lemons; these cookies will still be wonderful with lemon zest.

One more note about the lemon flavor. I call for lemon extract in this recipe. No, you cannot substitute lemon extract with lemon juice. Extra lemon juice will add too much moisture to the cookie dough, and the cookies may not come out with the right texture.

Sourdough Cookies with Fresh Blueberries

I suggest using fresh blueberries to make these cookies. You can use frozen blueberries, but if you do, you must ensure you drain them well before incorporating them. You’ll want to drain the frozen berries through a mesh sieve, pressing them to remove as much moisture as possible.

I also incorporated blueberry preserves into the cookie dough for extra blueberry flavor, and I’m so glad I did. It made the cookies swirly and cute and brought out the blueberry flavor.

lemon blueberry cookie dough in a white bowl. Blueberries and blueberry preserves are swirled throughout the dough.

Blueberry Muffin Cookies

These cookies taste like the best part of a blueberry muffin, the muffin top. They’re delicious and perfect for spring.

Here are all the ingredients you need to make these lemon blueberry cookies:

  • all-purpose flour
  • baking powder
  • baking soda
  • salt
  • unsalted butter
  • organic cane sugar
  • organic brown sugar
  • lemon extract
  • 1 egg + 1 egg yolk
  • Fermented lemon rind rinsed well and finely minced (or Zest of 2 lemons)
  • Sourdough starter (active and hydrated, or discard)
  • fresh blueberries
  • blueberry preserves
sourdough lemon blueberry cookies, also called blueberry muffin cookies on a piece of crinkly white parchment paper.

Making Lemon Blueberry Cookies with Sourdough Starter

Making cookies with a sourdough starter is all about how you mix the ingredients. The order you mix your ingredients is the most important part.

You must mix the sourdough starter with the wet ingredients and sugar before you add any dry ingredients. Also, I want to mention that you can use an active starter or discard. If you want to use discard, it should be at room temperature for the best results. Just follow the directions on the recipe card below, and you won’t have any problems.

As for storing the cookie dough, you can ferment the cookie dough in the fridge overnight before forming the cookie dough balls and baking.

When I make a batch of these cookies, I ferment them overnight in the fridge, then shape the dough into balls the next day. This recipe at 1x makes about 20 cookies, so usually bake six, then freeze the rest.

To bake the frozen cookie dough, just put the ball on a parchment paper-lined sheet pan, then bake as usual.

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Sourdough Discard

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5 from 2 reviews

Sourdough Lemon Blueberry Cookies (Blueberry Muffin Cookies)

This is the best lemon blueberry cookie recipe! These lemon blueberry cookies are made with fresh blueberries, fermented lemon, and sourdough starter for the most fantastic texture and flavor. I like to call these blueberry muffin cookies because they taste just like the top of a blueberry muffin!

  • Prep: 15 minutes
  • Cook: 20 minutes
  • Total Time: 35 minutes

Ingredients

  • 340 grams all purpose flour
  • 1/2 tsp baking powder
  • 1/2 tsp baking soda
  • 1 tsp salt
  • 230 grams unsalted butter, room temp, soft
  • 250 grams organic cane sugar
  • 55 grams organic brown sugar
  • 1 tsp lemon extract
  • 1 tsp lemon juice
  • 1 egg room temp
  • 2 tablespoons fermented lemon rind, rinsed well and finely minced (or Zest of 2 lemons)
  • 100 grams sourdough starter (active, hydrated)*
  • 1 1/2 cup fresh blueberries
  • 1/4 cup blueberry preserves

Instructions

  1. Before getting started make sure your butter and egg are room temperature.
  2. In a stand mixer fitted with the paddle attachment or with a hand mixer, beat the butter, cane sugar, and brown sugar together until combined.
  3. Scrape down the bowl and add the egg, lemon extract, lemon juice, fermented lemon (or zest) and sourdough starter. If you are using fermented lemon, be sure to rinse it well, remove the pulp and finely mince the rind.
  4. Mix well until light and fluffy.
  5. In a separate bowl sift together the flour, baking soda, baking powder and salt.
  6. Add the dry ingredients to the wet ingredients and fold together with a spatula until combined.
  7. Wash the blueberries, drain them well and pat dry with paper towels.
  8. Fold in the fresh blueberries and blueberry preserves until just combined. You want the blueberry jam to be swirly through the dough, not full incorporated.
  9. Cover the bowl with plastic wrap or reusable beeswax wrap and refrigerate the dough overnight.
  10. Roll the cookie dough into balls. Roll the balls through some cane sugar to lightly coat them before baking.
  11. Drop them 2 inches apart on the prepared cookie sheet.
  12. Bake at 375°F for 15-18 minutes until the cookies are set on the edges.
  13. Allow to cool completely on the pan.

Notes

  • how hydrated your starter is can influence the final texture of the cookies. I use a thick starter. A 100% (1:1) hydration starter may result in thinner cookies.
  • if you want to use discard instead of an active starter, ensure it is at room temperature.

Did you make this recipe?

Please leave a 5-star review below if you loved it! Tag @cultured.guru on Instagram

 

Nutrition information is auto-calculated and estimated as close as possible. We are not responsible for any errors. We have tested the recipe for accuracy, but your results may vary.

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Kaitlynn Fenley Author, Educator, Food Microbiologist
Kaitlynn is a food microbiologist and fermentation expert teaching people how to ferment foods and drinks at home.
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  1. Alex
    09|27|2023

    I have made this recipe multiple times and it is a family favorite! It has perfect balance of flavors and just a good balance of sweetness!

    Reply
    1. Kaitlynn Fenley
      09|28|2023

      Thank you for leaving a review! Happy to hear that you and your family love the cookies.

      Reply
  2. Taylor
    04|03|2025

    Probably my new favorite cookie – I’m blown away by the flavors!

    Reply
    1. Kaitlynn Fenley
      04|04|2025

      Thank you so much for leaving a review! These are my favorite for spring and I’m glad you love them!

      Reply

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A lot of people think vinegar kills all microbes b A lot of people think vinegar kills all microbes because shelf stable pickles do not contain microbes. But with shelf stable pickles, it’s the pasteurization/sterilization via hot water bath or pressure canning that makes shelf stable pickles free of microbes.

Hot hot hot acid in a pressurized environment does kill, well…most microbes. 

Think about “refrigerator pickle” recipes, though. They need to be stored in the refrigerator because vinegar alone doesn’t stop fermentation.

Fridge pickles are made without pasteurization/sterilization (canning) so they will wild ferment without refrigeration, and not necessarily in a good way because there’s not enough salt. 

All vinegar is made via fermentation too, and vinegar fermentation involves acetic acid bacteria, but also a ton of LAB, mainly Lactobacillus, Pediococcus, and Leuconostoc (the same genera you’d find in fermented veg.)  I linked a reference paper in my fermented mushroom recipe blog, so you all can read about the LAB involved in vinegar fermentation. 

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I will not ever wild lacto ferment just beets agai I will not ever wild lacto ferment just beets again lol. Mixing with cabbage for beet sauerkraut is the best though! 

“Lacto fermented beets” was the first ferment I tried to make after learning sauerkraut in college. My best friend Sidney came over and we used these gorgeous beets from the farmers market, with 2.5% salt, and some spices. Well, it ended up tasting like beet moonshine and it was just… not good.

But it was a conduit for learning. Those beets were my first lesson in how different sugars and growth in the rhizosphere vs the phyllosphere influences fermentation. 

Cabbage and the cabbage microbiome offer a lot to balance out beets in fermentation, and I think mixing into a sauerkraut is the only way to go for lacto fermenting beets! 

Try googlin’ “beet and red cabbage sauerkraut” and you’ll see my recipe, I’m Cultured Guru.
Squash is the secret ingredient! My Roasted Butte Squash is the secret ingredient!

My Roasted Butternut Squash Hot Sauce recipe is free on my website! I didn’t cook this one, so yes it’s still probiotic.

When lactic acid bacteria ferment the starches in winter squash, they naturally convert them into emulsifying compounds called exopolysaccharides. So when we blend our hot sauce after fermentation, there’s no watery separation in the bottle. Roasting the squash with the garlic for the recipes also adds such good flavor! 

Definitely make sure it’s fully fermented and not bubbling anymore before you blend and bottle. Otherwise, it’ll carbonate in the cute little hot sauce bottles.

#hotsauce
Myth Busting: Yes, the SCOBY IS the pellicle! Plee Myth Busting: Yes, the SCOBY IS the pellicle! Pleeeease stop saying it’s not. 😌



Watch till the end, I show you how to grow one!



This is a little tidbit from what I teach in the Kombucha lesson in our Fermented Drinks Semester online course!

I also share this recipe FOR FREE just ✨GOOGLE✨ “cultured guru SCOBY” and you’ll see my full recipe with the perfect sugar to tea ratios for growing, feeding and maintaining a kombucha SCOBY.

#kombucha
And the knife stays in the box. GOOGLE “sourdoug And the knife stays in the box. 

GOOGLE “sourdough king cake” my recipe is the first one! 👑☂️💚✨

If you’re like me and prefer from scratch, homemade everything, you’ll definitely want to try this king cake for Mardi Gras! I used organic naturally dyed sprinkles and all that jazz too. 

If you just search “sourdough king cake” on google you’ll see my recipe, it’s usually the first one. 

My main tips for making this:
✨use a very active starter or throw in some instant yeast with your starter
✨make sure the dough is actually proofed before shaping it. If it’s cold in your house it will take longer. 
✨please follow directions! You can cold ferment the dough in the fridge after it doubles in size and BEFORE filling and shaping.

🎵Song is Casanova by Rebirth Brass Band
Fermentation is a gift from the microbes of this e Fermentation is a gift from the microbes of this earth.

When we had a food business, I could never shake the feeling that fermentation is not meant to be sold to you from a fluorescently lit grocery shelf in an endless cycle of waste. Fermentation is meant to be cultivated in your home, with your hands, with intention and love in a sustainable, grateful practice of reciprocity and nourishment. 

This is the story of how we got here. 

After so many lessons learned, our small fermentation business is now value aligned, peaceful, fulfilling, and happy.  It often seems like the gut feelings (the microbes within us) guided us in the right direction. To teach. 

You can learn for free on our blog, or you can enroll in our online courses (we extended our new year sale!) Either way, with me as your teacher, you’ll learn to adopt a holistic perspective on the microbial ecosystems that influence our food, lives, and the planet.
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