Home FermentSourdough Discard New York Style Sourdough Discard Bagels (Ready in 4 hours)

New York Style Sourdough Discard Bagels (Ready in 4 hours)

by Kaitlynn Fenley
Tray of homemade sourdough discard bagels topped with poppy seeds, sesame seeds, and everything seasoning, with cream cheese on the side.

Make these absolutely delicious sourdough discard bagels in just 4 hours! This recipe for homemade sourdough bagels is great for sourdough beginners and includes an optional overnight ferment for better digestibility. This recipe works with active, bubbly sourdough starter or discard.

Homemade Sourdough Discard Bagels

If you’ve ever found a surplus of sourdough discard and wondered what to do with it, these sourdough discard bagels are the perfect solution for you! This recipe combines the tangy flavors of sourdough with the convenience of instant yeast, allowing you to whip up a batch of fresh, chewy bagels in just four hours with minimal hands-on effort.

For those seeking an extra benefit of sourdough digestibility, there’s an optional overnight fermentation step in the fridge. The overnight fermentation enhances the bagels’ flavor and improves their digestibility. Whether you’re a sourdough enthusiast or simply looking to reduce waste in your kitchen, these bagels are a delightful and practical way to make the most of your sourdough discard.

The Best Flour for Making Sourdough Discard Bagels

When making homemade bagels, using organic bread flour is a game changer. Bread flour is designed explicitly for yeast-leavened baked goods, boasting a higher gluten content than all-purpose flour.

Mixing bowl with partially mixed sourdough discard bagel dough.

This elevated gluten level is crucial for developing a chewy, dense bagel texture. The robust gluten network formed by bread flour helps the bagels hold their shape during boiling and baking, ensuring they have that ideal firm crust and tender interior. Additionally, choosing organic bread flour means you’re opting for a product free from synthetic pesticides and additives, which can contribute to a cleaner, more wholesome flavor in your bagels. Organic bread flour is an essential ingredient for bagel baking.

Are Sourdough Discard Bagels Healthier Than Regular Bagels?

Sourdough discard bagels can be healthier than regular bagels, thanks to the unique fermentation process. The key lies in beneficial microbes in the sourdough starter and/or an extended fermentation time.

Sourdough starters contain a community of wild yeast and various acid-producing bacteria. During fermentation, these microbes break down the flour carbohydrates, sugars, and proteins, producing organic acids and other byproducts that enhance the bagels’ nutritional profile. This fermentation process can make the bagels easier to digest than those made with only regular yeast. The sourdough starter fermentation microbes break down FODMAPs, reducing the potential to cause digestive discomfort and improving nutrient absorption.

Moreover, the longer fermentation time, especially if you opt for an overnight refrigerator proof, allows further breakdown of the dough’s complex carbohydrates. This extended period helps to neutralize phytic acid, an antinutrient found in grains that can inhibit the absorption of minerals like iron and zinc. By reducing phytic acid, sourdough discard bagels may offer better mineral availability and nutritional benefits.

In summary, the microbes in sourdough starter and the extended fermentation process enhance the bagels’ flavor and contribute to improved digestibility and nutrient availability, making sourdough discard bagels a healthier choice than traditional bagels.

My Favorite Bagel Toppings

I have some specific toppings listed in the recipe card below, but there are so many delicious toppings you can try on bagels.

Here are all my favorite bagel toppings you can try with this recipe:

  • Everything bagel seasoning (a blend of poppy seeds, sesame seeds, garlic, onion, and salt)
  • Sesame seeds
  • Poppy seeds
  • Caramelized onions
  • Fresh or dried herbs (such as rosemary, thyme, or oregano)
  • Cheddar cheese (shredded or slices)
  • Flaky sea salt
  • Cracked black pepper
  • Garlic granules
  • Dried onion flakes
  • Parmesan cheese
  • Dill or chives
  • Cinnamon sugar (for a sweet twist)

Sourdough Discard Bagels No Yeast— Three ways to make this recipe with sourdough starter

  • Active, bubbly, peaking sourdough starter: The first option is to make this recipe with an active, bubbly, peaking sourdough starter. This is the best option for making these bagels without packaged yeast. I do this all the time, and it works great; I double (sometimes triple if it’s cold) the proofing times in the recipe card when using only an active starter.
  • Sourdough discard from the fridge: The second option for making these bagels without any packaged instant yeast is to use sourdough discard from the fridge. You’ll need to start the dough the night before you plan to bake. So, in step 4 in the recipe card below, you will leave the dough covered overnight for 8-12 hours, then the following day, continue with step 5. This should allow enough time for the starter to become active in the dough. This method isn’t always successful and depends on the individual starter, how long it’s been in the fridge, and how established it is. This method also tends to result in more sour flavors.
  • Sourdough Discard + Instant Yeast: This is the method the recipe is written with. It’s the easiest and quickest. Adding instant yeast with the sourdough starter gives you all the great flavors of classic sourdough but with the reliable results of packaged yeast. You can still get long-fermentation benefits by proofing the shaped bagels overnight in the fridge before cooking. (see next paragraph for details on long overnight proofing)

My best advice for getting the best results from this recipe is to use an active peaking starter or a combination of starter discard and instant yeast.

Long Ferment Sourdough Discard Bagels Overnight

To long ferment these bagels overnight, you place them in the fridge after they’re shaped. Once in the fridge, you can leave them to long ferment for up to 72 hours. Then, continue with the recipe as written.

Frequently Asked Questions

How do you stretch and fold the dough while it’s in the bowl?

Here is a picture demonstration of stretching and folding the dough while keeping it in the bowl:

Why Do You Boil Sourdough Discard Bagels?

Boiling bagels is a crucial step in achieving their distinctive texture and flavor. Here’s why this process is essential:

  • Texture: Boiling bagels before baking helps to create their characteristic chewy crust. The boiling process gelatinizes the starches on the surface of the dough, forming a barrier that traps moisture inside the bagel. This results in a dense, chewy interior and a shiny, crispy crust.
  • Structure: Boiling helps to set the bagels’ shape. It provides an initial dough firming, allowing the bagels to retain their round shape during baking.
  • Flavor Development: The boiling water, often with added ingredients like malt syrup or honey, contributes to the bagels’ flavor. Malt syrup, for example, adds a subtle sweetness and enhances browning during baking.
  • Browning: The boiling process affects how the bagels brown in the oven. The gelatinized surface helps achieve a rich, golden-brown crust.

Overall, boiling is essential for creating bagels with the perfect balance of chewiness, flavor, and appearance.

Why are My Homemade Sourdough Bagels so Chewy?

Boiling bagels for too long can make them excessively chewy. Boiling bagels for too long can lead to over-gelatinizing the starches on the surface, resulting in a denser and chewier texture than desired. Additionally, extended boiling times can cause the bagels to become overly puffy or misshapen as the dough expands.

Typically, bagels are boiled for about 30 seconds to 1 minute per side. This short boiling time is usually sufficient to achieve the desired texture and flavor without compromising the bagels’ quality.

How to Store Sourdough Discard Bagels

  1. Cooling: Allow your homemade bagels to cool completely on a wire rack before storing them. This prevents condensation from forming, which can make them soggy.
  2. Short-Term Storage:
    • Room Temperature: Store bagels at room temperature in an airtight container or resealable plastic bag for up to 4 days.
  3. Long-Term Storage:
    • Freezing: To freeze bagels, wrap each bagel individually in parchment paper or aluminum foil. Then, place them in a freezer-safe plastic bag or airtight container. This prevents freezer burn and helps maintain their quality. You can freeze bagels for up to 3 months.
    • Thawing: When you’re ready to eat them, you can thaw bagels at room temperature, or for a quicker option, toast them directly from the freezer. You can also defrost them in the microwave for a few seconds, then toast them to restore some of the crispy texture.

More Sourdough Discard Recipes I Highly Recommend

Tray of homemade sourdough discard bagels topped with poppy seeds, sesame seeds, and everything seasoning, with cream cheese on the side.
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New York Style Sourdough Discard Bagels (Ready in 4 hours)

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4.9 from 15 reviews

Make these absolutely delicious sourdough discard bagels in just 4 hours! This recipe for homemade sourdough bagels is great for sourdough beginners and includes an optional overnight ferment for better digestibility. This recipe works with active, bubbly sourdough starter or discard.

  • Author: Kaitlynn Fenley
  • Prep Time: 3 hours
  • Cook Time: 30 Minutes
  • Total Time: 3 hours 30 minutes
  • Yield: 7 Bagels
  • Category: sourdough
  • Method: Baking
  • Cuisine: American

Ingredients

  • 720 grams bread flour (6 cups)
  • 120 grams sourdough starter discard (1 cup)
  • 1/2 teaspoon Instant Yeast*
  • 280 grams water (1 1/4 cups)
  • 15 grams sea salt (about 2 teaspoons)
  • 40 grams raw honey (2 tablespoons)
  • 60 grams water, set aside (1/4 cup)

For the Boiling Water Bath

  • 1 Tablespoon baking soda
  • 1 Tablespoon honey or sugar

For the Toppings

  • 1 Tablespoon egg whites
  • 2 Tablespoons Poppy Seeds 
  • 2 Tablespoons Sesame Seeds
  • 2 Tablespoons Black Sesame Seeds
  • 2 Tablespoons Dried Minced Onion

Instructions

  1. Read the recipe notes on proofing time before starting.
  2. In a large bowl, combine the starter, instant yeast, flour, salt, honey, and cold water. 
  3. Knead the ingredients together until a uniform, but shaggy dough ball forms. Use the extra 1/4 cup of water if necessary. 
  4. Cover the bowl with a plate or a damp towel and proof the dough for 1 hour at a warm temp. 
  5. Stretch and fold the dough. wet your hands and stretch the dough up out of the bowl and fold it in on itself, do this a few times until the dough smooths out and has more tension. Scoop around the sides of the dough with your hands to form it into a nice, smooth ball. Cover and let the dough proof for 30 minutes at a warm temperature.
  6. Next, sprinkle some flour on the surface of your counter. Remove the dough from the bowl and place it on the floured surface.  
  7. Stretch the dough into a rectangle that’s a little bigger than a sheet of paper. Be gentle with the dough!! You don’t want to flatten it. Just lightly pull the sides until it’s a rectangle about the size of a sheet of paper. 
  8. Divide the dough into 7 equal pieces (each piece should weigh about 176 grams).
  9. Line a baking sheet with parchment paper and sprinkle flour on top of the parchment paper. 
  10. Grab a piece of dough, and fold it in, forming a small round dough ball. Place the dough ball on the floured parchment paper. Repeat for the other pieces. 
  11. Lightly sprinkle the top of the dough balls with flour. Cover the dough balls with a towel and let them rise for about 30 more minutes until they puff up a good bit.
  12. Flour your hands and pick up a dough ball. Place it in your right hand. Using your thumb on the top of the dough ball and middle finger on the bottom, squeeze a hole through the center of the dough ball. Bring your index finger and ring finger through the hole in the dough to touch your thumb. 
  13. Use your other hand to guide the donut-shaped dough through your right-hand palm and fingers that are held in a circular shape. This is how you create a bagel shape. 
  14. Place the shaped bagels back on the floured parchment paper. (lightly sprinkle more flour if you need to)
  15. Let the shaped bagels rest for about 15 minutes until they’re nice and puffy, but don’t overproof.
  16. (optional) Place the bagel dough in the refrigerator for a final proof of 12 hours. 
  17. Preheat your oven to 450° F. 
  18. Gather your toppings and add them to small bowls for easy use.
  19. Bring a large pot of water to a boil. Add in the baking soda and the honey (or sugar). 
  20. Using a slotted spoon, place each bagel in the boiling water for about a minute, flipping at 30 seconds. 
  21. Remove the bagel from the water, place it back on the parchment paper.
  22. Brush the boiled bagels with egg white and sprinkle on the toppings. 
  23. Repeat for the remaining bagels. Once they all have toppings, place the bagels in the oven. 
  24. Bake for approximately 20 minutes* until golden brown. Rotate the bagels at 10 minutes for even baking. 
  25. Remove and allow to cool for 30 minutes.

Notes

  • I proof my dough in my air fryer that is also a bread proofer set to 98° F. The times in this recipe are for those conditions. If you are not using a proofer, and the conditions in your home are cooler, proofing times may take longer.
  • If you want to make this recipe without any packaged yeast, you can! Double the proofing times in the recipe directions and use bubbly, peaking, active starter.
  • Bake time may vary. I usually end up baking for 35 minutes total. You can check the bagels every 5 minutes to ensure you do not overcook them. 

Did you make this recipe?

Please leave a 5-star review below if you loved it! Tag @cultured.guru on Instagram

 

Nutrition information is auto-calculated and estimated as close as possible. We are not responsible for any errors. We have tested the recipe for accuracy, but your results may vary.

author avatar
Kaitlynn Fenley Author, Educator, Food Microbiologist
Kaitlynn is a food microbiologist and fermentation expert teaching people how to ferment foods and drinks at home.

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45 comments

Tina May 27, 2020 - 11:50 am

Great and simple recipe, but the bake time is off. Perhaps the temperature also. I do not have a gas oven, first time making them at 450 degrees they were a tad too overdone at 23 minutes.

Reply
Kaitlynn Fenley May 27, 2020 - 1:44 pm

Thank you for your feedback. I’m sorry the bake time was off for you. I bake these bagels every week since Jon eats them for breakfast, and that’s what I bake them at every time. Every oven is going to be slightly different. That’s why I included that “the bake time may vary” in the notes. I’ll add in a direction to check the bagels at 20 minutes.

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Nancy January 14, 2021 - 6:56 pm

I will try this soon but have a question: on steps 16 and 17, should I cover with a towel again while proofing?

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Kaitlynn Fenley January 15, 2021 - 8:36 am

You can cover them with a towel to place them in the fridge, but you don’t have to.

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Kyle January 24, 2021 - 5:47 pm

You mention that the ball of dough will be pretty dry, but just how dry? When I do my folds I really have to pull at it.

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Kaitlynn Fenley January 24, 2021 - 6:03 pm

yep, that sounds right. It gets easier to work with as it rises.

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Michelle Jensen January 28, 2021 - 7:07 pm

I keep my sourdough starter in the fridge and feed once per week, so it is not super active, can I make these with discard or do I need to make sure my starter is very active?

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Kaitlynn Fenley January 28, 2021 - 7:08 pm

No, the starter needs to be active.

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Cindi August 18, 2022 - 6:08 pm

I have tried bagel recipes from other websites that have not turned out so well, but this recipe was fantastic! My family thought they looked like I could sell them in a New York bagel shop! They were simply delicious. I used a great quality bread flour (Better Basics Milling) but I’m sure there are other great flour sources as well. Next time I plan to mill my own flour. You can’t go wrong with this recipe. The only thing I will note is that I need to use the top shelf in my oven as baking them on the bottom shelf will cause the bottoms of the bagels to burn a bit. If you love bagels, you will love this recipe!






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Kaitlynn Fenley August 18, 2022 - 6:47 pm

So glad you loved the recipe! When I run out of my flour I want to try better basics milling too!

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Emma August 29, 2022 - 6:16 pm

So easy! Lots of steps seemed overwhelming but they’re soooo helpful, not long, and easy to complete!!!!!






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Lauren November 27, 2022 - 7:27 pm

The. Best. Bagels. I’m from New York and now live in Florida. I had basically given up on trying to find good bagels here until this recipe. It’s now a household favorite. Fresh out the oven they are just heavenly and they freeze/re-heat really well too so we can enjoy them all week! Don’t hesitate to make these!






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Julia December 10, 2022 - 1:58 pm

Amazing bagels! I was so exicitng taking these out of the oven the first time I made them. Making these for Christmas breakfast gathering. 🙂






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Maddy December 13, 2022 - 6:53 pm

If I wanted to ferment these overnight (more convenience sake) which step should I do that? After creating the bagel shapes?

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Kaitlynn Fenley December 13, 2022 - 7:20 pm

Step 17. Where it says “place the bagel dough in the refrigerator for a final proof of 12 hours”

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Jacquelyn February 4, 2023 - 4:43 am

These are delicious! I used honey instead of maple syrup and a mix of all purpose and whole wheat flour and they came out beautifully. I also only needed to bake them for about 15-18 min with my oven. I live over in Germany and bagels are hard to come by so I will definitely be making these again. So yummy!






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Emma February 10, 2023 - 3:35 pm

Love love love this recipe. Made it multiple times. While making it this time, I noticed the notes mention it makes 12 bagels and the recipe says 8 or 9. Thoughts?

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Kaitlynn Fenley February 10, 2023 - 5:00 pm

It just depends on the size of bagel you want. if you cut the dough into 12 bagels, they will be mini bagels. 8 bagels will be regular-sized.

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Irene January 10, 2024 - 6:11 am

Could you freeze the bagels for a later time? If yes, is it best to freeze them unbaked, cooked and pre baked or fully baked?
Thank you for this great recipe!!!






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Kaitlynn Fenley January 11, 2024 - 10:53 am

you can freeze fully baked!

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Nik September 4, 2024 - 6:22 am

This is my go to recipe for bagels.

Quick question–was this recently changed? I don”t recall any instructions with instant yeast and have been using maple syrup not honey.






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Kaitlynn Fenley September 4, 2024 - 8:30 am

hey! So glad to hear it’s your go-to recipe!

I did recently update this blog post, to better serve more people in our audience, and to add more process photos. It’s essentially the same recipe as before, just leave the packaged yeast out and double the proofing times. Check the recipe notes 🙂 You can also still use maple syrup, either one works.

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Chaenney September 18, 2024 - 2:28 pm

Have you done inclusions like cinnamon chips or jalapeños and cheddar IN the dough or making something like a french toast bagel using this recipe?

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Kaitlynn Fenley September 18, 2024 - 2:52 pm

yes! you can add in anything you want in the first step, when you initially knead everything together.

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Shelby September 21, 2024 - 2:57 pm

I think maybe the water measurement was off but I had to use WAY more than 280 grams? 280 grams was so dry I couldn’t mix the flour all in.
Otherwise this recipe is AMAZING! I’ve made them twice so far.

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Ashlee September 23, 2024 - 6:14 pm

I had this same issue. It was definitely more than the extra 1/4 cup she mentioned. Plus my hands were very wet during the stretch and folds because it definitely wasn’t stretching and folding. I was basically kneading because the dough was so dense. I did use 40% rye flour and 60% bread flour so that could be why. They’re currently proofing in my fridge so we’ll see how they turn out.

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Kaitlynn Fenley September 23, 2024 - 6:28 pm

You can add more than 1/4 cup if you need, to get it to come together. And yes, your dough was so dense, because you changed up the recipe. Rye flour absorbs much more water than bread flour. Any whole grain flour will absorb much more water that white flour.

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Ashlee September 24, 2024 - 12:55 pm

Just wanted to follow up to say they turned out beautifully! Total recipe time was 10 hours for me as I increased proof time for not using yeast and had them in the fridge for a few hours before booking/baking. The texture and flavour from using rye was delicious and the little extra water seemed to work great. Thank you so much for the recipe 😊






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Monday September 27, 2024 - 7:26 pm

These came out incredible! Thanks for putting my sourdough discard to good use… I can’t believe it, I can make bagels!






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Cassie October 26, 2024 - 8:15 pm

Love this recipe! I make it every weekend to prep for the following week and love experimenting with toppings. I almost always need the extra water that’s stated in the recipe. I once put too much baking soda in the water and they tasted like pretzels lol.






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Rita Dubenko October 28, 2024 - 10:36 pm

This is the first sour dough bagels I’ve made and they turned out AMAZING!! The recipe was so easy to follow. My family can’t stop eating them which means I need to keep making them 🤣🤣. Thank you for this wonderful recipe!!






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Teana October 30, 2024 - 1:10 pm

Hi, love many of your recipes. Just wanted to confirm how cold the water needs to be for this recipe, ice cold or just tap cold water?

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Kaitlynn Fenley November 2, 2024 - 11:22 am

Thank you! Glad you’re loving the recipes! any cool temperature of water works. It doesn’t need to be ice cold.

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madi November 2, 2024 - 9:35 am

Is it possible to make these bagels without honey (or other sugars)? I was hoping to make these to share with my 10 month old and trying to avoid sugars and babies aren’t supposed to have honey! Thank you!

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Kaitlynn Fenley November 2, 2024 - 11:20 am

yes! you can leave out the honey and sugar and they should still come out fine!

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Mariah H. November 3, 2024 - 2:24 pm

Came out amazing!! First time making bagels! Started my sourdough from scratch and had been itching to use it since waiting for it to rise!






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Kaitlynn Fenley November 4, 2024 - 12:13 pm

awesome! Thank you for leaving a review!

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Maple December 3, 2024 - 2:04 pm

This was absolutely amazing!! I did a second batch of blueberry ones. I used thawed frozen blueberries. I didn’t add the additional 1/4 water and I added about half a cup of blueberries during the s&f stage. I ended up kneading this batch instead and after about 5mins the dough came together nicely and baked up with the same texture as the original batch!

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Kaitlynn Fenley December 4, 2024 - 10:57 am

yay!! so happy you love the recipe and I bet your blueberry bagels were amazing!

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Cindi December 11, 2024 - 10:59 am

Love ❤️ ❤️ this recipe!!!!! It’s the best !!! Question: Can I knead in my stand up mixer? Or just by hand?

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Kaitlynn Fenley December 11, 2024 - 7:58 pm

thank you! yes you should be able to use a stand mixer with a dough hook. maybe add a pinch more water. and since this is dough is more firm, don’t use the mixer with a glass bowl.

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Lindsey December 11, 2024 - 7:54 pm

I have made these a few times and they always turn out great! I end up making about 12 bagels and keep them in the fridge overnight to long ferment. They’re simple and my boys love them. They also freeze well.






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Kaitlynn Fenley December 11, 2024 - 7:56 pm

Thank you so much for leaving a review!! Glad to hear your boys love them 🤗

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Julie December 15, 2024 - 7:30 am

My first attempt at making bagels was with your recipe! They are amazing!! Every, single detail was covered and I followed it to the letter! Added a tiny bit more water to the mix but that was it! I decided to make 8 bagels and they were pretty big. I’ll be making this for our Christmas brunch and make 10 smaller bagels. Thanks for taking the terror out of making bagels!! 😉






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