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  • RecipesWe love to create delicious recipes with gut health in mind. By using our recipes, you can easily create any dish knowing that it’s good for gut health! Our recipe blog also includes Vegan Recipes, Vegetarian Recipes, Gluten Free Recipes, and Paleo Recipes.
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Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.
Sourdough Discard Muffins

My Sourdough Gingerbread Muffin Recipe with Eggnog Icing

This sourdough gingerbread muffin recipe blends organic ingredients and warm spices for a wholesome, cozy and festive treat.

Prep: 10 minutes
Cook: 30 minutes
Total: 40 minutes
Jump to Recipe Rate Recipe
Recipe Index | Ferment | Sourdough Discard | Sourdough Discard Muffins

My Sourdough Gingerbread Muffin Recipe with Eggnog Icing

This sourdough gingerbread muffin recipe blends organic ingredients and warm spices for a wholesome, cozy and festive treat.

Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.

Healthy Gingerbread Muffins

There’s something truly special about homemade treats during the holiday season, and you’re going to love this sourdough gingerbread muffin recipe. The gingerbread muffins are the perfect way to bring warmth and comfort to your kitchen this holiday season.

These muffins are made with wholesome, organic ingredients and feature a hint of tang from sourdough. They combine the rich spices of ginger, nutmeg, and allspice with the natural depth of sourdough starter. Whether you’re baking for a cozy breakfast, a holiday gathering, or to fill your home with festive flavors, these muffins provide a nourishing twist on a classic favorite.

Close-up of sourdough gingerbread muffins on crinkled parchment paper, featuring muffins drizzled with eggnog icing, dusted with powdered sugar, and one muffin cut in half to reveal its spiced, moist texture.

Sourdough Gingerbread Muffin Recipe Ingredients

Here is a list of all the ingredients you need to bake these delicious sourdough gingerbread muffins! Note that I use a mix of whole wheat and all-purpose flour in this recipe, but you can use just all-purpose with great results.

  • all-purpose flour
  • whole wheat flour
  • brown sugar
  • powdered sugar
  • baking soda & baking powder
  • ground Ginger
  • allspice
  • nutmeg
  • cinnamon
  • salt
  • organic molasses
  • grass-fed butter
  • sourdough starter
  • vanilla extract
  • whole milk
  • 2 eggs
  • eggnog
Overhead view of a mixing bowl with dry ingredients for sourdough gingerbread muffins, including whole wheat flour, all-purpose flour, brown sugar, baking soda, and spices like ginger and cinnamon.
Mixing bowl with wet ingredients, including molasses, sourdough starter, and melted butter, being combined with the dry ingredients.
Thick and spiced sourdough gingerbread muffin batter being mixed with a wooden spoon in a white mixing bowl on a marble countertop.

Using Sourdough Discard in Muffins

The fermentation process used to create sourdough bread enhances its nutritional profile. Sourdough is easier to digest than traditional yeast bread. In sourdough, lactic acid bacteria break down gluten, fructans, and phytic acid. This can be particularly beneficial for individuals with gluten or FODMAP sensitivities.

Muffins are not usually long-fermented, but they can be! I don’t long ferment these gingerbread muffins, but many readers have told me they have successfully fermented the batter overnight in the fridge for easier digestion. You can try fermenting the muffin batter overnight in the refrigerator before preheating your oven and filling your muffin tin with batter.

Gingerbread Muffin Recipe with Eggnog Icing

Eggnog mixed with powdered sugar makes a fantastic icing for gingerbread muffins. It enhances the flavor and creates a beautifully smooth and sturdy finish. Unlike traditional milk-based icings, eggnog creates an icing that dries more effectively. The rich, spiced flavor of eggnog complements the warm spices in the gingerbread, adding a festive depth to each bite. This icing offers a subtle sweetness and creaminess that pairs perfectly with the muffins’ bold flavors of ginger, cinnamon, and cloves.

Gingerbread Muffin Recipe Tips

One crucial tip when making these sourdough gingerbread muffins is to avoid overmixing the batter. Overmixing can result in dense muffins rather than light and fluffy protein muffins, and the reason behind this is the formation of gluten.

Gluten, a protein present in flour, gives structure to baked goods. However, excessive mixing develops gluten strands, leading to a denser texture. To prevent this, gently mix the dry and wet ingredients until they are just combined, ensuring there are still some lumps and streaks of flour in the batter.

This technique allows the muffins to rise correctly, resulting in a tender crumb.

My other muffin baking tip is always to use a thin metal aluminum muffin tin with paper liners. A metal muffin tin works way better than a silicone muffin pan.

Storing Gingerbread Muffins

Storing baked sourdough gingerbread muffins properly ensures they remain fresh and delicious. Here are some tips on how to store them effectively:

  • Room Temperature Storage:
    • Allow muffins to cool completely.
    • Place them in an airtight container lined with paper towels to absorb excess moisture.
    • Store at room temperature for up to 3-4 days.
  • Refrigeration:
    • If the weather is hot or humid, consider refrigerating the muffins.
    • Store in an airtight container in the fridge for up to one week.
  • Freezing Muffins:
    • Cool muffins completely before freezing.
    • Place muffins in a freezer-safe bag or container.
    • Label it with the date and freeze it for up to 3 months.
  • Reheating Frozen Muffins:
    • Remove the desired number of muffins from the freezer.
    • Microwave on high for 20-30 seconds or until warm.
    • Alternatively, preheat the oven to 350°F (175°C) and heat muffins for 10-15 minutes until warmed.

Gingerbread Muffin Recipe FAQ

What’s the secret to moist muffins?

The key to moist muffins is preventing them from frying out. Here are some common issues and solutions:

  • Low-Fat Ingredients: Low-fat substitutes can reduce moisture. This recipe uses grass-fed butter to keep muffins moist.
  • Too Much Flour: Over-measuring flour can make muffins dry. Use the spoon-and-level method for accuracy.
  • Overmixing: Mixing the batter too much can develop excessive gluten, resulting in dense muffins. Mix until just combined.
  • Baking Time: Baking for too long can dry out muffins, and every oven runs at a slightly different temperature. Check them a few minutes early with a toothpick; it should come out clean but not dry.

What temperature do you bake muffins at?

For best results, I bake muffins at 350° F. I always use my Breville smart oven to bake smaller items like muffins, and it works perfectly every time.

More Sourdough Muffin Recipes

  • Cottage Cheese Pumpkin Protein Muffins with Sourdough Discard
  • Double Chocolate Cherry Muffins with Sourdough Discard
  • Oatmeal Chocolate Chip Muffins with Sourdough Discard
Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.
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Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.
Sourdough Discard Muffins

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5 from 1 review

My Sourdough Gingerbread Muffin Recipe with Eggnog Icing

This sourdough gingerbread muffin recipe blends organic ingredients and warm spices for a wholesome, festive treat that’s perfect for a cozy holiday gathering, a warm snack, or a Christmas breakfast!

  • Prep: 10 minutes
  • Cook: 30 minutes
  • Total Time: 40 minutes

Ingredients

Gingerbread Muffins

  • 1 1/4 cup all-purpose flour
  • 1 cup whole wheat flour
  • 1/4 cup brown sugar, packed
  • 1/2 teaspoon baking soda
  • 1 teaspoon baking powder
  • 1 tsp ground ginger
  • 1/2 tsp cinnamon
  • 1/4 tsp allspice
  • 1/4 tsp nutmeg
  • 1 teaspoon salt
  • 3/4 cup molasses
  • 1/2 cup grass-fed butter, melted, room temperature
  • 1/2 cup sourdough starter, room temperature
  • 2 teaspoons vanilla extract
  • 1/3 cup whole milk, room temperature
  • 2 eggs, room temperature

Eggnog icing

  • 1/2 cup powdered sugar
  • 2 tablespoons eggnog

Instructions

  1. Preheat your oven to 350° F.
  2. Line a muffin tin with paper liners.
  3. In a medium-large mixing bowl, combine the flour, sugar, baking soda, baking powder, ginger, cinnamon, allspice, nutmeg, and salt.
  4. In a separate bowl, combine the molasses, butter, sourdough starter, vanilla, milk, and two eggs. Whisk until combined. The butter may be clumpy, this is fine and helps keep the muffins moist.
  5. Gently fold the wet ingredients into the dry ingredients until everything is just combined. Do not over-mix. The batter should be thick, and it’s okay if there are clumps.
  6. Spoon the batter into the lined muffin tins.
  7. Bake for about 30 minutes total. Rotate the pan halfway through.
  8. Allow to cool completely before topping with icing.
  9. To make the icing, combine the eggnog and powdered sugar in a small bowl.

Did you make this recipe?

Please leave a 5-star review below if you loved it! Tag @cultured.guru on Instagram

 

Nutrition information is auto-calculated and estimated as close as possible. We are not responsible for any errors. We have tested the recipe for accuracy, but your results may vary.

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Kaitlynn Fenley Author, Educator, Food Microbiologist
Kaitlynn is a food microbiologist and fermentation expert teaching people how to ferment foods and drinks at home.
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hey i’m kaitlynn, i’m a microbiologist and together with my husband jon we are cultured guru.

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  1. Courtney
    09|29|2025

    These are so yummy! Ended up pulling mine at 25 minutes and they are so perfect and moist inside. Not too sweet at all. I ended up making my icing with maple syrup since eggnog isn’t quite in season yet!

    Reply

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Oxymel is a medicinal herbal elixir, made through Oxymel is a medicinal herbal elixir, made through the fermentation of herbs in honey and raw vinegar. 

It’s my favorite time-tested herbal remedy that’s over 2,400 years old. It originated in ancient Greece and Persia, where it was considered a gift from the gods.

Hippocrates, the famous ancient Greek physician, was a staunch advocate of oxymel and incorporated it into his medical practices. Depending on the herbs used to make it, oxymel can help with many ailments and improve health in various ways!

In a world where everyone is asking AI, I set out to learn about the best herbal combinations from real, practiced experts in herbalism.

I felt so much joy collaborating with these herbalists @openspace.center @karlytheherbalist @lilianaruizhealy and @the.brettivy to recommend the best medicinal herb combinations in this recipe!

You can get my oxymel recipe from the link in my bio!
Okay, fine, it’s not the only reason, but it’s Okay, fine, it’s not the only reason, but it’s a reaallllyy good reason to buy another pumpkin!

My new sourdough pumpkin bagel recipe is up on our blog!
https://cultured.guru

these roasted pumpkin bagels can be made savory or sweet! Both options are included in the recipe and are perfect for fall sourdough baking. 

The savory is a pumpkin, parmesan, onion (leek) flavor, and the sweet is a cinnamon brown sugar pumpkin flavor! ✨

You can also choose to use active starter or discard with yeast. It’s up to you! 

Let me know if you try baking these this weekend! 🍂🎃🥯
#bagels #pumpkin
Google “golden beet kvass recipe” and you’ll Google “golden beet kvass recipe” and you’ll see mine, it’s the first one. 🫧✨

I only like to learn fermentation from two places: from knowing the microbes and from cultural recipes passed down in families.

I originally learned how to make kvass from a Russian food blogger, named Peter. @petersfoodadventures He grew up drinking beet kvass made by his grandfather. It doesn’t get more historically/culturally accurate than that

After learning from Peter’s blog, I developed my golden beet kvass recipe, with some slight variations of my own and a secondary fermentation to carbonate it. (Peter is credited and linked in the recipe blog too, so you can check out his original beet kvass recipe!)

Anyways, beet kvass is a delicious, sweet, bubbly beverage, not a salty lacto-ferment 🤗🫧✨

#beets #fermentation
dont want to be dramatic, buttttt these sourdough dont want to be dramatic, buttttt these sourdough apple carrot muffins are the best thing I bake every fall! 🍎🥕they’re perfectly spiced, soft, sweet and moist,  and I love to top them with a little icing. If you’re looking for a fall sweet that isn’t toooo sweet and is still healthy,  the full recipe is available on my website  https://cultured.guru and linked right in my bio. happy baking!
nuance is needed in the alcohol conversation. Pe nuance is needed in the alcohol conversation. 

People in Blue Zones , particularly in Mediterranean regions, often drink 1-2 glasses of wine daily with meals and among friends, enjoying organic wines rich in antioxidants. 

This contrasts with new studies that show “no safe level of alcohol.” These new studies lump together all types of alcohol (including hard liquor) consumed in unhealthy ways, without distinction of specific lifestyle and beverage consumption environment.

I think context is key. Wine is not necessarily a reason for longevity in Blue Zones, but it is a small, supportive component of a larger lifestyle that includes a fiber-rich diet, regular physical activity, strong social connections, and a sense of purpose. Consumption is limited to about 1-2 glasses per day and is almost always enjoyed with food and in the company of friends and family. 

This turns wine into a ritual that promotes social bonds. Not a toxic coping mechanism.

And type of alcohol does matter. Many Blue Zone populations, especially in the Mediterranean, drink natural, organic, or locally grown and brewed wines, which have a much higher antioxidant content and a lower sugar, pesticide, and additive content. 

Because of all of this, I think more nuance is needed in the alcohol conversation. 

🫧Get my apple and pear hard cider recipes on my website! https://cultured.guru 
🍎You can GOOGLE “cultured guru cider” to easily get to all my cider recipes! 
🍐You can always find all my recipes in my website recipe index too!

(Disclaimer: I am very well aware of the epidemiology that states no amount of alcohol is safe. In the general population, especially in America, drinking patterns, social patters, and lifestyle are all predominately unhealthy. So yes, for the general, average population no amount of alcohol can be considered safe.)
My new pumpkin bagel recipe is up on our blog! htt My new pumpkin bagel recipe is up on our blog!
https://cultured.guru

My sourdough roasted pumpkin bagels recipe can be made savory or sweet! Both options are included in the recipe and are perfect for fall sourdough baking. 

The savory is a pumpkin parmesan onion bagel, and the sweet is a cinnamon brown sugar pumpkin bagel! ✨

You can also choose to use active starter or discard with yeast. It’s up to you! 

Let me know if you try baking these this weekend! 🍂🎃🥯
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