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Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.
Sourdough Discard Muffins

My Sourdough Gingerbread Muffin Recipe with Eggnog Icing

This sourdough gingerbread muffin recipe blends organic ingredients and warm spices for a wholesome, cozy and festive treat.

Prep: 10 minutes
Cook: 30 minutes
Total: 40 minutes
Jump to Recipe Rate Recipe
Recipe Index | Ferment | Sourdough Discard | Sourdough Discard Muffins

My Sourdough Gingerbread Muffin Recipe with Eggnog Icing

This sourdough gingerbread muffin recipe blends organic ingredients and warm spices for a wholesome, cozy and festive treat.

Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.

Healthy Gingerbread Muffins

There’s something truly special about homemade treats during the holiday season, and you’re going to love this sourdough gingerbread muffin recipe. The gingerbread muffins are the perfect way to bring warmth and comfort to your kitchen this holiday season.

These muffins are made with wholesome, organic ingredients and feature a hint of tang from sourdough. They combine the rich spices of ginger, nutmeg, and allspice with the natural depth of sourdough starter. Whether you’re baking for a cozy breakfast, a holiday gathering, or to fill your home with festive flavors, these muffins provide a nourishing twist on a classic favorite.

Close-up of sourdough gingerbread muffins on crinkled parchment paper, featuring muffins drizzled with eggnog icing, dusted with powdered sugar, and one muffin cut in half to reveal its spiced, moist texture.

Sourdough Gingerbread Muffin Recipe Ingredients

Here is a list of all the ingredients you need to bake these delicious sourdough gingerbread muffins! Note that I use a mix of whole wheat and all-purpose flour in this recipe, but you can use just all-purpose with great results.

  • all-purpose flour
  • whole wheat flour
  • brown sugar
  • powdered sugar
  • baking soda & baking powder
  • ground Ginger
  • allspice
  • nutmeg
  • cinnamon
  • salt
  • organic molasses
  • grass-fed butter
  • sourdough starter
  • vanilla extract
  • whole milk
  • 2 eggs
  • eggnog
Overhead view of a mixing bowl with dry ingredients for sourdough gingerbread muffins, including whole wheat flour, all-purpose flour, brown sugar, baking soda, and spices like ginger and cinnamon.
Mixing bowl with wet ingredients, including molasses, sourdough starter, and melted butter, being combined with the dry ingredients.
Thick and spiced sourdough gingerbread muffin batter being mixed with a wooden spoon in a white mixing bowl on a marble countertop.

Using Sourdough Discard in Muffins

The fermentation process used to create sourdough bread enhances its nutritional profile. Sourdough is easier to digest than traditional yeast bread. In sourdough, lactic acid bacteria break down gluten, fructans, and phytic acid. This can be particularly beneficial for individuals with gluten or FODMAP sensitivities.

Muffins are not usually long-fermented, but they can be! I don’t long ferment these gingerbread muffins, but many readers have told me they have successfully fermented the batter overnight in the fridge for easier digestion. You can try fermenting the muffin batter overnight in the refrigerator before preheating your oven and filling your muffin tin with batter.

Gingerbread Muffin Recipe with Eggnog Icing

Eggnog mixed with powdered sugar makes a fantastic icing for gingerbread muffins. It enhances the flavor and creates a beautifully smooth and sturdy finish. Unlike traditional milk-based icings, eggnog creates an icing that dries more effectively. The rich, spiced flavor of eggnog complements the warm spices in the gingerbread, adding a festive depth to each bite. This icing offers a subtle sweetness and creaminess that pairs perfectly with the muffins’ bold flavors of ginger, cinnamon, and cloves.

Gingerbread Muffin Recipe Tips

One crucial tip when making these sourdough gingerbread muffins is to avoid overmixing the batter. Overmixing can result in dense muffins rather than light and fluffy protein muffins, and the reason behind this is the formation of gluten.

Gluten, a protein present in flour, gives structure to baked goods. However, excessive mixing develops gluten strands, leading to a denser texture. To prevent this, gently mix the dry and wet ingredients until they are just combined, ensuring there are still some lumps and streaks of flour in the batter.

This technique allows the muffins to rise correctly, resulting in a tender crumb.

My other muffin baking tip is always to use a thin metal aluminum muffin tin with paper liners. A metal muffin tin works way better than a silicone muffin pan.

Storing Gingerbread Muffins

Storing baked sourdough gingerbread muffins properly ensures they remain fresh and delicious. Here are some tips on how to store them effectively:

  • Room Temperature Storage:
    • Allow muffins to cool completely.
    • Place them in an airtight container lined with paper towels to absorb excess moisture.
    • Store at room temperature for up to 3-4 days.
  • Refrigeration:
    • If the weather is hot or humid, consider refrigerating the muffins.
    • Store in an airtight container in the fridge for up to one week.
  • Freezing Muffins:
    • Cool muffins completely before freezing.
    • Place muffins in a freezer-safe bag or container.
    • Label it with the date and freeze it for up to 3 months.
  • Reheating Frozen Muffins:
    • Remove the desired number of muffins from the freezer.
    • Microwave on high for 20-30 seconds or until warm.
    • Alternatively, preheat the oven to 350°F (175°C) and heat muffins for 10-15 minutes until warmed.

Gingerbread Muffin Recipe FAQ

What’s the secret to moist muffins?

The key to moist muffins is preventing them from frying out. Here are some common issues and solutions:

  • Low-Fat Ingredients: Low-fat substitutes can reduce moisture. This recipe uses grass-fed butter to keep muffins moist.
  • Too Much Flour: Over-measuring flour can make muffins dry. Use the spoon-and-level method for accuracy.
  • Overmixing: Mixing the batter too much can develop excessive gluten, resulting in dense muffins. Mix until just combined.
  • Baking Time: Baking for too long can dry out muffins, and every oven runs at a slightly different temperature. Check them a few minutes early with a toothpick; it should come out clean but not dry.

What temperature do you bake muffins at?

For best results, I bake muffins at 350° F. I always use my Breville smart oven to bake smaller items like muffins, and it works perfectly every time.

More Sourdough Muffin Recipes

  • Cottage Cheese Pumpkin Protein Muffins with Sourdough Discard
  • Double Chocolate Cherry Muffins with Sourdough Discard
  • Oatmeal Chocolate Chip Muffins with Sourdough Discard
Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.
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Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.
Sourdough Discard Muffins

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5 from 1 review

My Sourdough Gingerbread Muffin Recipe with Eggnog Icing

This sourdough gingerbread muffin recipe blends organic ingredients and warm spices for a wholesome, festive treat that’s perfect for a cozy holiday gathering, a warm snack, or a Christmas breakfast!

  • Prep: 10 minutes
  • Cook: 30 minutes
  • Total Time: 40 minutes

Ingredients

Gingerbread Muffins

  • 1 1/4 cup all-purpose flour
  • 1 cup whole wheat flour
  • 1/4 cup brown sugar, packed
  • 1/2 teaspoon baking soda
  • 1 teaspoon baking powder
  • 1 tsp ground ginger
  • 1/2 tsp cinnamon
  • 1/4 tsp allspice
  • 1/4 tsp nutmeg
  • 1 teaspoon salt
  • 3/4 cup molasses
  • 1/2 cup grass-fed butter, melted, room temperature
  • 1/2 cup sourdough starter, room temperature
  • 2 teaspoons vanilla extract
  • 1/3 cup whole milk, room temperature
  • 2 eggs, room temperature

Eggnog icing

  • 1/2 cup powdered sugar
  • 2 tablespoons eggnog

Instructions

  1. Preheat your oven to 350° F.
  2. Line a muffin tin with paper liners.
  3. In a medium-large mixing bowl, combine the flour, sugar, baking soda, baking powder, ginger, cinnamon, allspice, nutmeg, and salt.
  4. In a separate bowl, combine the molasses, butter, sourdough starter, vanilla, milk, and two eggs. Whisk until combined. The butter may be clumpy, this is fine and helps keep the muffins moist.
  5. Gently fold the wet ingredients into the dry ingredients until everything is just combined. Do not over-mix. The batter should be thick, and it’s okay if there are clumps.
  6. Spoon the batter into the lined muffin tins.
  7. Bake for about 30 minutes total. Rotate the pan halfway through.
  8. Allow to cool completely before topping with icing.
  9. To make the icing, combine the eggnog and powdered sugar in a small bowl.

Did you make this recipe?

Please leave a 5-star review below if you loved it! Tag @cultured.guru on Instagram

 

Nutrition information is auto-calculated and estimated as close as possible. We are not responsible for any errors. We have tested the recipe for accuracy, but your results may vary.

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Kaitlynn Fenley Author, Educator, Food Microbiologist
Kaitlynn is a food microbiologist and fermentation expert teaching people how to ferment foods and drinks at home.
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  1. Courtney
    09|29|2025

    These are so yummy! Ended up pulling mine at 25 minutes and they are so perfect and moist inside. Not too sweet at all. I ended up making my icing with maple syrup since eggnog isn’t quite in season yet!

    Reply

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My favorite topic I teach in our online course is My favorite topic I teach in our online course is called Fermentation Variables. The whole lesson is centered around the fact that there are six main variables that influence the outcome of fermentation.

Here they are, in no particular order:

Sugar
Salt
Oxygen
Acidity
Temperature
Time

Temperature and time depend on each other most closely. 

that means, for all of our foods and drinks that ferment at room temp, things slow way down in the winter cold. 

The fermentation timeline is simply longer when it’s colder (and faster when it’s hotter). The microbes, kind of like us, make things happen slowly in the cold winter. 

I think this is yet another sign from nature that we’re supposed to rest and be gentle and gracious with deadlines, work, and not rush things this time of year. 

Let it be slow, it’ll still be great, it just takes a little more patience and time. 

If you’re looking to start fermentation as an analog hobby in the new year, our courses are 40% off right now! You can use code NEWYEARS at checkout. (Yes, you learn online, but it’s delicious, long form content + the skills are life long). What you learn empowers you to get off the computer/phone and go ferment some delicious foods and drinks. 

Touching cabbage and dough is just as good as “touching grass” lol 

Let me know if you have questions about our courses or just fermentation in general in the comments!

#fermentation
Yes cooking kills the microbes, but idc. I mean, I Yes cooking kills the microbes, but idc. I mean, I care, but in a “thank you for your service microbes” kinda way. 🫡

Cider braised pork and sauerkraut is a perfect choice for New Year’s or any winter meal! I lovvveee pairing it with butternut squash polenta bc it’s full of vitamin C for cold and flu szn. 

Eating pork and sauerkraut on New Year’s Day is a tradition. And I really do think it brings good luck and prosperity.

Get the recipe on our blog, linked in my profile and in story highlights! 

I’m really looking forward to creating more recipes like this in the new year, to show you all the joys of incorporating ferments into meals and recipes 😌✨ stay tuned! 

#newyear #sauerkraut #fermentation
One Christmas I gifted everyone in my family the N One Christmas I gifted everyone in my family the New York style sourdough bagels and they were thrilled. (The bagels we’re actually way under proofed, but I still gifted them and everyone loved them lol)

You can get the full recipe on my blog! And these can be made with discard and instant yeast or with just active starter.

 All the details are in the 5-star rated recipe on my website. 

#bagels #sourdough
This cookie dough is long-fermented overnight in t This cookie dough is long-fermented overnight in the fridge for the softest, most flavorful, melt-in your mouth sourdough gingerbread cookies.

For Christmas 2025, I tried something new with these cookies. I created a gingerbread sourdough starter to use in this recipe! I made it by feeding some of my established starter a mix that includes molasses and gingerbread spices. I just added the instructions for the gingerbread starter in the notes of my cookie recipe.

Get the full recipe and directions on my website! https://cultured.guru 

You can use the recipe index to see all my Christmas season recipes!

#gingerbread #sourdough
My gingerbread sourdough starter recipe 🎄✨ Like a My gingerbread sourdough starter recipe 🎄✨

Like and save for some fun Christmas sourdough baking! 

I made this up a few days ago to use in my soft sourdough gingerbread cookies. (cookie recipe is in my recipe index on my website!)

#sourdough #gingerbread
Christmas gift feta cheese🧀🎄✨ Part two of my four Christmas gift feta cheese🧀🎄✨

Part two of my four part series on homemade fermented foods to gift this holiday season! This one takes about five days total to prepare, so start now if you plan to gift this one on Christmas. 

GOOGLE “cultured guru feta” to get my feta recipe any time! You can also use the recipe index linked in my bio! 

#fermentation
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