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Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.
Sourdough Discard

My Sourdough Gingerbread Muffin Recipe with Eggnog Icing

This sourdough gingerbread muffin recipe blends organic ingredients and warm spices for a wholesome, cozy and festive treat.

Prep: 10 minutes
Cook: 30 minutes
Total: 40 minutes
Jump to Recipe Rate Recipe
Recipe Index | Ferment | Sourdough Discard | Sourdough Discard Muffins

My Sourdough Gingerbread Muffin Recipe with Eggnog Icing

This sourdough gingerbread muffin recipe blends organic ingredients and warm spices for a wholesome, cozy and festive treat.

Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.

Healthy Gingerbread Muffins

There’s something truly special about homemade treats during the holiday season, and you’re going to love this sourdough gingerbread muffin recipe. For me, baking from scratch, with sourdough starter, feels the healthiest and most enjoyable during the holidays. These gingerbread muffins are the perfect way to bring warmth and comfort to your kitchen this holiday season while still feeling balanced and healthy.

Overhead view of a mixing bowl with dry ingredients for sourdough gingerbread muffins, including whole wheat flour, all-purpose flour, brown sugar, baking soda, and spices like ginger and cinnamon.
Mixing bowl with wet ingredients, including molasses, sourdough starter, and melted butter, being combined with the dry ingredients.
Thick and spiced sourdough gingerbread muffin batter being mixed with a wooden spoon in a white mixing bowl on a marble countertop.

Using Sourdough Discard in Muffins

The fermentation process used to create sourdough bread enhances its nutritional profile. Sourdough is easier to digest than traditional yeast bread. In sourdough, lactic acid bacteria break down gluten, fructans, and phytic acid. This can be particularly beneficial for individuals with gluten or FODMAP sensitivities.

Muffins are not usually long-fermented, but they can be! I don’t long ferment these gingerbread muffins, but many readers have told me they have successfully fermented the batter overnight in the fridge for easier digestion. You can try fermenting the muffin batter overnight in the refrigerator before preheating your oven and filling your muffin tin with batter.

Gingerbread Muffin Recipe with Eggnog Icing

I decided to try Eggnog mixed with powdered sugar to add icing to these muffins. Eggnog enhances the flavor and creates a beautifully smooth and sturdy finish to the icing drizzles. Unlike traditional milk-based icings, eggnog dries more effectively. The rich, spiced flavor of eggnog also complements the warm spices in the gingerbread.

Gingerbread Muffin Recipe Tips

One crucial tip when making these sourdough gingerbread muffins is to avoid overmixing the batter. Overmixing can result in dense muffins rather than light and fluffy protein muffins, and the reason behind this is the formation of gluten.

Gluten, a protein present in flour, gives structure to baked goods. However, excessive mixing develops gluten strands, leading to a denser texture. To prevent this, gently mix the dry and wet ingredients until they are just combined, ensuring there are still some lumps and streaks of flour in the batter. This technique allows the muffins to rise correctly, resulting in a tender crumb.

My other muffin baking tip is always to use a thin metal aluminum muffin tin with paper liners. A metal muffin tin works way better than a silicone muffin pan.

Close-up of sourdough gingerbread muffins on crinkled parchment paper, featuring muffins drizzled with eggnog icing, dusted with powdered sugar, and one muffin cut in half to reveal its spiced, moist texture.

Storing Gingerbread Muffins

Storing baked sourdough gingerbread muffins properly ensures they remain fresh and delicious. Here are some tips on how to store them effectively:

  • Room Temperature Storage:
    • Allow muffins to cool completely.
    • Place them in an airtight container lined with paper towels to absorb excess moisture.
    • Store at room temperature for up to 3-4 days.
  • Refrigeration:
    • If the weather is hot or humid, consider refrigerating the muffins.
    • Store in an airtight container in the fridge for up to one week.
  • Freezing Muffins:
    • Cool muffins completely before freezing.
    • Place muffins in a freezer-safe bag or container.
    • Label it with the date and freeze it for up to 3 months.
  • Reheating Frozen Muffins:
    • Remove the desired number of muffins from the freezer.
    • Microwave on high for 20-30 seconds or until warm.
    • Alternatively, preheat the oven to 350°F (175°C) and heat muffins for 10-15 minutes until warmed.

More Sourdough Muffin Recipes

  • Cottage Cheese Pumpkin Protein Muffins with Sourdough Discard
  • Double Chocolate Cherry Muffins with Sourdough Discard
  • Oatmeal Chocolate Chip Muffins with Sourdough Discard
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Overhead view of sourdough gingerbread muffins on parchment paper, some drizzled with creamy eggnog icing, others dusted with powdered sugar, and one muffin cut in half to show its moist interior.
Sourdough Discard

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5 from 1 review

My Sourdough Gingerbread Muffin Recipe with Eggnog Icing

This sourdough gingerbread muffin recipe blends organic ingredients and warm spices for a wholesome, festive treat that’s perfect for a cozy holiday gathering, a warm snack, or a Christmas breakfast!

  • Prep: 10 minutes
  • Cook: 30 minutes
  • Total Time: 40 minutes

Ingredients

Gingerbread Muffins

  • 1 1/4 cup all-purpose flour
  • 1 cup whole wheat flour
  • 1/4 cup brown sugar, packed
  • 1/2 teaspoon baking soda
  • 1 teaspoon baking powder
  • 1 tsp ground ginger
  • 1/2 tsp cinnamon
  • 1/4 tsp allspice
  • 1/4 tsp nutmeg
  • 1 teaspoon salt
  • 3/4 cup molasses
  • 1/2 cup unsalted butter, melted, room temperature
  • 1/2 cup sourdough starter, room temperature
  • 2 teaspoons vanilla extract
  • 1/3 cup whole milk, room temperature
  • 2 eggs, room temperature

Eggnog icing

  • 1/2 cup powdered sugar
  • 2 tablespoons eggnog

Instructions

  1. Preheat your oven to 350° F.
  2. Line a muffin tin with paper liners.
  3. In a medium-large mixing bowl, combine the flour, sugar, baking soda, baking powder, ginger, cinnamon, allspice, nutmeg, and salt.
  4. In a separate bowl, combine the molasses, butter, sourdough starter, vanilla, milk, and two eggs. Whisk until combined. The butter may be clumpy, this is fine and helps keep the muffins moist.
  5. Gently fold the wet ingredients into the dry ingredients until everything is just combined. Do not over-mix. The batter should be thick, and it’s okay if there are clumps.
  6. Spoon the batter into the lined muffin tins.
  7. Bake for about 30 minutes total. Rotate the pan halfway through.
  8. Allow to cool completely before topping with icing.
  9. To make the icing, combine the eggnog and powdered sugar in a small bowl.

Did you make this recipe?

Please leave a 5-star review below if you loved it! Tag @cultured.guru on Instagram

 

Nutrition information is auto-calculated and estimated as close as possible. We are not responsible for any errors. We have tested the recipe for accuracy, but your results may vary.

author avatar
Kaitlynn Fenley Food Microbiologist and Fermentation Specialist
Kaitlynn is a Food Microbiologist and FSPCA-certified fermentation specialist. An alumna of the LSU College of Science, she combines her academic background in microbiology with her Cajun heritage to create safe and delicious recipes.
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  1. Courtney
    09|29|2025

    These are so yummy! Ended up pulling mine at 25 minutes and they are so perfect and moist inside. Not too sweet at all. I ended up making my icing with maple syrup since eggnog isn’t quite in season yet!

    Reply

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Ep. 1: Dill and Horseradish Pickles, aka the pickl Ep. 1: Dill and Horseradish Pickles, aka the pickles I’ve been using in every salad and salad dressing recipe lately.

✨Google✨ “fermented horseradish pickles” when you are ready to make these and you’ll see my recipe first! 

I know some of you will ask if you can use fresh horseradish, and I honestly don’t know because I haven’t tested it. I love using the prepared horseradish though, and I’ve tested many recipes with the prepared kind, so I do recommend using that!

I think this Summer Pickle Pursuit Series is going to be so much fun, and I can’t wait to share more and more pickle recipes with you guys! I’m even going to grow my own cucumbers to ferment for the first time ever because I have a garden now. Stay tuned for the next recipe very soon 😍🥒
Root veggies in kombucha? Yes, please! 🥕🍊✨ This ca Root veggies in kombucha? Yes, please! 🥕🍊✨ This carrot, blood orange, and turmeric combo is packed with flavor and health benefits. I even made a cranberry beet version recently! Root veggie juice just works so well in kombucha. Try it out! Both recipes are on the blog! My recipe index is linked in my bio. #fermentation #kombucha
✨google✨ “fermented celery recipe” and you’ll see ✨google✨ “fermented celery recipe” and you’ll see mine, it’s the first one. 🤗 You can also find the recipe through our recipe index on our website! 

& Cher, the most boring thing you can do is correct my pronunciation in the comments. Fermented or “Fermeded”… potato, potahtoe. You know what it means. I’m Cajun, so a girl is gonna roll those t’s into d’s sometimes. Get over it, and enjoy this fermented celery recipe. 🤗 #celery #fermentation
It can suppress overgrowth of Candida albicans, wh It can suppress overgrowth of Candida albicans, while boosting good bacteria in your gut! To get the recipe 👉GOOGLE SEARCH “garlic sauerkraut”👈 and you’ll see mine it’s the first one.

Roasting garlic increases beneficial garlic compounds like diallyl sulfide and diallyl disulfide — or DADS, for short. Both of these compounds have been studied for their anti-inflammatory (anti-cancer), antioxidant, and antifungal properties.

It’s definitely a sauerkraut you should keep in your rotation.

Sources:
PMC8777027 (Diallyl Disulfide (DADS) Ameliorates Intestinal Candida albicans Infection by Modulating the Gut microbiota and Metabolites and Providing Intestinal Protection)

https://doi.org/10.3390/fishes9100401 (diallyl disulfide (DADS) shows a substantial increase, with concentrations rising from 1.6 mg/g in non-fermented garlic to 4.8 mg/g in its fermented counterpart, suggesting enhanced bioactivity through fermentation)

#garlic #fermentation
Bok choy is similar in texture to Napa cabbage and Bok choy is similar in texture to Napa cabbage and lovely for fermentation. 

✨Google fermented bok choy ✨and you’ll see my recipe, it’s the first one. ☝🏼 

Since bok choy and all cabbages grow low and very close to the soil, their microbiome composition is wonderful! This makes all cabbages easy vegetables to ferment, and fermented bok choy is one of my absolute favorites.

Ps. I used some tiny weck jar lids for weights in my bigger weck jar and it worked great! #fermentation #bokchoy
I usually save these for my personal insta 🙂 I usually save these for my personal insta :)
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